Cem Özdoğan

Curriculum Vitæ

Izmir Katip Celebi University

Faculty of Engineering and Architecture

Department of Engineering Sciences H1-33

Balatçık, Çiğli 35620 İzmirTürkiye

T +90 (232) 270 5470

T +90 (232) 329 3535 / 3803

u +90 (232) 386 0888

B cem.ozdogan@ikc.edu.tr, cozdogan11@gmail.com

Í http://cemozdogan.net

Education

2002

1996

Ph.D. in Physics, Middle East Technical University, Ankara Turkey.

1996

1994

M.Sc. in Physics, Middle East Technical University, Ankara Turkey.

1994

1989

B.Sc. in Physics, Middle East Technical University, Ankara Turkey.

PhD thesis

title

Order(N) Parallel Tight Binding Molecular Dynamics Computer Simulation: Appli-

cation to Carbon Nanotubes

supervisors Prof. Dr. Gülay Dereli

description

An O(N) Parallel Tight–Binding Molecular Dynamics (TBMD) algorithm in the

simulations of Single Wall Carbon Nanotubes (SWCNT) is developed. We have

applied O(N) (Divide and Conquer scheme) technique in Carbon nanotube simulation

and parallelized our O(N) TBMD program. The structural stability and energetics

of 10x10 and 17x0 tubes are investigated. Elastic properties under uniaxial strain

are studied at room temperature. The Young’s modulus, tensile strength, Poisson

ratio and frequency of vibrations are calculated. We have observed disintegrations

under large strains.

Master thesis

title

Molecular Dynamics Computer Simulation of Copper Clusters: Structural Stability,

Energetics and Melting

supervisors Prof. Dr. Şakir Erkoç

description

We have investigated cluster properties of copper using our developed Molecular–

Dynamics code. In the simulation an empirical potential energy function (PEF)

proposed by Erkoç has been used, which contains two–body atomic interactions.

The structural stability and energetics of Cu

(

= 13

−

135) shell like structured

clusters have been investigated at temperatures

= 1

and

= 300

. The

melting behavior of clusters n = 13 and n = 55 have been investigated.

Languages

Turkish Native Mother Tongue

English Fluent Daily Practice

Interests

Physics

{

Atomic and Molecular [10] Clusters [7–9, 11, 16, 17, 21, 22, 24, 25, 32–34, 40,

41]

{

Classical and Quantum Molecular Dynamics Simulations [3, 4, 7, 8, 20, 23, 26–30,

32, 33, 42, 43, 45, 47]

{ Many Body Potentials [30, 47]

{ Ion-surface Collisions [20, 26, 42, 43]

{ Hydrogen Storage [21, 22, 24]

{ Energy Storage - Supercapacitors [2]

Chemistry

Electronic Structure Calculations/Computational Chemistry [1–6, 9–11, 13, 15–19,

21, 22, 24, 25, 31, 34, 40, 41, 46]

Computer

Parallel Computing & High Performance Computing (HPC) [7, 8, 12, 14, 20, 23,

26–29, 32, 33, 35, 36, 42–46], Data Mining [12, 14, 35, 36, 44]

Main Focus

Carbon [1–6, 13, 15, 18, 19, 23, 27, 28, 31, 38, 41, 45, 46] and boron [1–5, 9, 11,

16, 17, 25, 29, 31, 34, 40] based nano and periodic systems: Structural, electronic

and magnetic properties

Computer and Scientiﬁc Skills

Development, Software and Technical

EAM MD

Parallelization of an Embedded Atom Model Molecular Dynamics (EAM MD)

program and application to ion-surface collisions and clusters [7, 8, 20, 26, 32, 33,

42, 43]

TBMD

Writing and Parallelization of a Tight Binding Molecular Dynamics (TBMD) program

and application to carbon nanotubes [23, 27–29, 45]

Writing of a Classical Molecular Dynamics (MD) program and application to copper

clusters [30, 47]

Languages Fortran, C, C++, Bash Scripts, Python

Compilers Intel, Portland

Debuggers TotalView, gdb

Libraries

(Sca)+Lapack, Blas, MPI(Message Passing Interface), PVM (Parallel Virtual Ma-

chine), OpenMP

General L

X, PovRay

Math Matlab, Mathematica

Networking LAN (Local Area Network) administration with Linux

Cluster Build-up, Administration

Technical

Course

CISCO CCNA Computer Networks, October 2006-June 2007, Ankara, METU Türkiye

(Certiﬁcate)

Technical

Course

Joint ICTP-INFM School on High Performance Computing on Linux Clusters, 31

January-15 February 2002, Trieste, Italy (Participation)

Technical

Course

Performance Optimization and Parallelization on Sun Systems, Istanbul, Turkey

April 4-6, 2000 (Participation)

Computational Chemistry/Physics

Packages VASP, Gaussian, QuantumATK, (Tran)siesta

Visualization XCrysDen, Chemcraft, Gaussview, QuantumATK (VNL)

Experience

Coordination

2015

2012

Physics Courses, Cankaya University, General Coordinator, University Wide.

2014

2011

Course Timetabling, Cankaya University, General Coordinator, University Wide.

2010

2008

Erasmus, Cankaya University, Coordinator, Computer Engineering Department.

2015

2002

Parallel and Scientiﬁc Computation Cluster

, Cankaya University, Administration,

University Wide.

2010

New Trends in Nanotechnology and Nonlinear Dynamical Systems

, Cankaya

University, Scientiﬁc and Organizing Committee, Symposium.

2008

International Workshop on New Trends in Science and Technology

, Cankaya

University, Scientiﬁc and Organizing Committee, Symposium.

Short Visits

2010

Visiting Scientist

, Prof. Dr. Ravindra Pandey, Michigan Technological University,

USA, 6 weeks.

Transport properties of azobenzene; Transiesta

2009

Visiting Scientist

, Prof. Dr. Alexander Quandt, University of Greifswald, Germany,

2 weeks.

Simulation of novel graphene based nanosized materials; Vasp

2008

Researcher

, Prof. Dr. Alexander Quandt, University of Greifswald, Germany, 2

weeks.

Simulation of novel graphene based nanosized materials; Vasp

2007

Researcher

, Prof. Dr. Alexander Quandt, University of Greifswald and HLRS

Stuttgart, Germany, 10 weeks.

An ab initio study of planar boron-carbon interfaces; Vasp

Project Activities

2021

2017

Supervisory

, Design of Planar and Tubular Nanostructured Hetero Double Layer

Electrostatic Supercapacitors and Investigation of Energy Storage Capabilities with

First Principle Methods, TÜBİTAK, MFAG 115F137.

Scientiﬁc Research Project supported by The Scientiﬁc and Technical Research Council of

Turkey

2018

2015

Researcher, Investigation of the structural, electronic, and magnetic properties of

hexagonal boron nitride/graphene (h-BN/G) in-plane hybrid and hetero structures,

and design of nanosystems functionalized with defects, TÜBİTAK, MFAG 114F426.

Scientiﬁc Research Project supported by The Scientiﬁc and Technical Research Council of

Turkey

2007

Supervisory

, An ab initio study of planar boron-carbon interfaces, HPC-EUROPA,

RII3-CT-2003-506079.

Research Infrastructure Action under the FP6 "Structuring the European Research Area"

Programme

2007

2005

Researcher

, Storage of Hydrogen as Clean Energy Resource on Nanostructures,

TÜBİTAK, TBAG (105T084).

Scientiﬁc Research Project supported by The Scientiﬁc and Technical Research Council of

Turkey

2001

2000

Researcher

, Computer Simulation of Electronic Structure of Nanotubes and Eﬀects

of the Stress and Topological Defects on the Electronic Structure, TÜBİTAK, TBAG

(199T106).

Scientiﬁc Research Project supported by The Scientiﬁc and Technical Research Council of

Turkey

2002

2000

Researcher

, Order(N) Parallel Computer Simulation of Electronic Structure of

Nanotubes, METU, AFP-2000-07-02-11.

Scientiﬁc Research Project supported by Middle East Technical University

Supervising

2021

2017

PhD

, Habibu Aminu Hussain, Izmir Katip Celebi University, A First Principle

Investigation of the Eﬀect of Vacancies on Structural, Electronic and Magnetic

Properties of Graphene and h-BN Hybrid, Supervisor.

Completed

2020

2014

PhD

, Nazan Kara, Middle East Technical University, Carbon Based Nano-Structure

Supercapacitors for Energy Storage, Co-supervisor.

Not Completed

2011

2010

MSc

, Ahmet Artu Yıldırım, Cankaya University, Parallelization Study on the Clus-

tering Technique to Mine Large Datasets, Supervisor.

Completed

2010

2009

MSc

, Afşar Türk, Cankaya University, Heating Eﬀect of Electromagnetıc Fields on

Human Head at GSM Frequencies, Co-supervisor.

Completed

2005

2004

MSc

, Hüseyin Şahin Akbal, Cankaya University, Developing Tools For The Enhance-

ment of Remote Sensing Images and Parallel Programming Applications, Supervisor.

Completed

Academics

2019

Professor

, Department of Engineering Sciences, İzmir Kâtip Çelebi University, İzmir.

• Teaching.

{ Physics I;

{ Physics II;

{ Scientiﬁc Computing with Python;

{ Introduction to High Performance and Parallel Computing.

2018

2017

Professor

, Department of Engineering Sciences, İzmir Kâtip Çelebi University, İzmir,

Chairman.

• Teaching.

{ Physics I;

{ Physics II;

{ Engineering Quantum Mechanics.

2017

2016

Associate Professor

, Department of Engineering Sciences, İzmir Kâtip Çelebi

University, İzmir.

• Teaching.

{ Physics II;

{ Engineering Quantum Mechanics;

{ Electrical, Optical and Magnetic Proprties of Materials.

2015

2013

Associate Professor, Department of Materials Science and Engineering, Çankaya

University, Ankara, Chairman.

• Teaching.

{ Materials Science and Engineering Orientation;

{ Numerical Methods;

{ Parallel Computing;

{ Physics I;

{ Physics II.

• Technical & Coordination.

{ Administration and maintenance Parallel and Scientiﬁc Computation Cluster;

{ Administration and maintenance Teaching Purpose Cluster;

{ Coordinator of Course Timetabling: University wide;

{ General Coordinator of Physics I and Physics II Courses: University wide.

2013

2011

Associate Professor, Department of Materials Science and Engineering, Çankaya

University, Ankara, Founder Acting Chairman.

• Teaching.

{ General Physics for Engineering I;

{ Parallel Computation (Graduate);

{ Numerical Computation;

{ Operating Systems;

{ Parallel Computing;

{ Physics II;

{ Statistical Computations.

• Technical & Coordination.

{ Administration and maintenance Parallel and Scientiﬁc Computation Cluster;

{ Administration and maintenance Teaching Purpose Cluster;

{ Coordinator of Course Timetabling: University wide;

{ General Coordinator of Physics I and Physics II Courses: University wide.

2011

2009

Associate Professor

, Department of Computer Engineering, Çankaya University,

Ankara, Vice Chairman.

2009

Associate Professor (Condensed Matter Physics; Computational Sciences)

Department of Computer Engineering, Çankaya University, Ankara.

2009

2002

Assistant Professor

, Department of Computer Engineering, Çankaya University,

Ankara.

• Teaching.

{ Numerical Computation;

{ Operating Systems;

{ Parallel Computing;

{ Parallel Computation (Graduate);

{ Statistical Computations;

{ Systems Programming.

• Technical.

{ Administration and maintenance Parallel and Scientiﬁc Computation Cluster;

{ Administration and maintenance Teaching Purpose Cluster.

2002

2001

Instructor, Department of Computer Engineering, Çankaya University, Ankara.

• Teaching.

{ Advanced Programming Languages (Delphi);

{ Computer Literacy;

{ Introduction to Computers and Programming, Programming in C;

{ Object Oriented Programming, Programming in C++.

• Technical.

{

Building up Parallel and Scientiﬁc Computation Cluster http://siber.cankaya.edu.tr/boron-

ganglia/ (NFS, PBS);

{

Building up Teaching Purpose Cluster for CENG471 & CENG505 Parallel Computing

Courses http://wee.cankaya.edu.tr/ganglia/ (Diskless booting, NFS (Network File Sys-

tem), PBS (Portable Batch System)).

2001

1999

Research Assistant

, Department of Physics, Middle East Technical University,

Ankara.

• Assisting.

{ Building up Parallel and Scientiﬁc Computation Cluster;

{ Elementary Condensed Matter Physics, Recitation;

{ General Physics I & II, Laboratory & Recitation.

1999

1994

Research Assistant, Department of Physics, Kırıkkale University, Ankara.

• Assisting.

{ Building, maintenance and administrate the servers;

{ General Physics I & II, Laboratory & Recitation.

Vocational

1993

Technical Person, Department of Biophysics, Hacettepe University, Ankara.

Did technical work. During 8 months in a project supported by TÜBİTAK (The Scientiﬁc and

Technical Research Council of Turkey), in a position to assist for computer and electronics

related works.

Editorial

2014

2013

The Scientiﬁc World Journal

, Hindawi Publishing Corporation, SCI-Expanded,

Editorial Board: Atomic and Molecular Physics.

2012

Turkish Journal of Electrical Engineering and Computer Sciences

, TÜBITAK,

SCI-Expanded, Assistant Editor.

Panelist

2012

Panelist and External Reviewer

, MFAG/MAG of, TÜBİTAK, The Scientiﬁc and

Technical Research Council of Turkey.

Reviewer

{ Computational Materials Science - 1

{ Diamond and Related Materials - 1

{ Journal of Inorganic and Organometallic Polymers and Materials - 1

{ Journal of Physical Chemistry C - 1

{ Molecular Simulation - 1

{ Physical Review A - 1

{ Physcial Review B - 5

{ RSC Advances - 10

{ RSC Journal of Materials Chemistry A - 1

{ RSC New Journal of Chemistry - 1

{ RSC Physical Chemistry Chemical Physics - 1

{ Turkish Journal of Electrical Engineering and Computer Sciences - 2

{ Turkish Journal of Chemistry - 1

{ Turkish Journal of Physics - 4

{ Cankaya University Journal of Science and Engineering - 1

Citations

{ Web of Science Citations at February 11, 2024

{

Google Scholar Citations at February 11, 2024 TÜBİTAK Rating of Publications

{ Web of Science Categories

Journal Publications (Web of Science)

[1]

2023

•

Nurten Akman and Cem Özdoğan. “Modulation of electronic and magnetic properties

of graphene-triangular h-BN hybrid through monovacancy: Carbon vacancy-BN size

coupling”. In: Materials Science and Engineering: B 298 (2023), 116863 (Cited 0

time). doi: https://doi.org/10.1016/j.mseb.2023.116863.

[2]

2022

•

Cem Özdoğan and Hatice Kökten. “An approach for quantum capacitance of

graphene, carbon nanotube, silicene and hexagonal boron nitride nanoscale super-

capacitors by non-equilibrium Green’s function method”. In: FlatChem 31 (2022),

100313 (Cited 1 time). doi:

https://doi.org/10.1016/j.flatc.2021.100313

[3]

2020

•

Habibu Aminu Hussain, Nurten Akman, and Cem Özdoğan. “Investigation of

the mono vacancy eﬀects on the structural, electronic and magnetic properties

of graphene hexagonal-boron nitride in-plane hybrid embracing diamond shaped

graphene island”. In: Solid State Sciences 108 (2020), 106395 (Cited 2 time). doi:

https://doi.org/10.1016/j.solidstatesciences.2020.106395.

[4]

2020

•

Nurten Akman and Cem Özdoğan. “Vacancy induced robust magnetism in graphene

hexagonal-boron nitride in-plane hybrids with hexagonal shaped islands”. In: Journal

of Magnetism and Magnetic Materials 502 (2020), 166530 (Cited 4 times). doi:

10.1016/j.jmmm.2020.166530.

[5]

2018

•

Nurten Akman and Cem Özdoğan. “Island shape, size and interface dependency on

electronic and magnetic properties of graphene hexagonal-boron nitride (h-BN) in-

plane hybrids”. In: Journal of Physics and Chemistry of Solids 115 (2018), 187–198

(Cited 10 times). doi: 10.1016/j.jpcs.2017.12.025.

[6]

2014

•

Cem Özdoğan, Jens Kunstmann, and Alexander Quandt. “Localization of metallicity

and magnetic properties of graphene and of graphene nanoribbons doped with boron

clusters”. In: Philosophical Magazine 94.16 (2014), 1841–1858 (Cited 8 times). doi:

10.1080/14786435.2014.895875.

[7]

2013

•

Hani A. Alariﬁ, Murat Atiş, Cem Özdoğan, Amming Hu, Mustafa Yavuz, and

Y. Zhou. “Determination of Complete Melting and Surface Premelting Points of

Silver Nanoparticles by Molecular Dynamics Simulation”. English. In: Journal of

Physical Chemistry C 117.23 (June 2013), 12289–12298 (Cited 96 times). doi:

10.1021/jp311541c.

[8]

2013

•

Hani A. Alariﬁ, Murat Atiş, Cem Özdoğan, Amming Hu, Mustafa Yavuz, and Y.

Zhou. “Molecular Dynamics Simulation of Sintering and Surface Premelting of

Silver Nanoparticles”. English. In: Materials Transactions 54.6 (June 2013), 884–889

(Cited 43 times). doi: 10.2320/matertrans.MD201225.

[9]

2012

•

Murat Taş, Nurten Akman, Cem Özdoğan, and Ihsan Boustani. “Fragmentation and

Coulomb explosion of multicharged small boron clusters”. English. In: Physical Review

B 85.23 (June 2012), 235445 (Cited 1 time). doi:

10.1103/PhysRevB.85.235445

[10]

2011

•

Çiğdem Yuksektepe, Canan Kazak, Cem Özdoğan, Ziya Burhanettin Guvenc, Orhan

Büyükgüngör, Figen Arslan, and Mustafa Odabaşoğlu. “Synthesis, Molecular Struc-

ture and DFT Study of 2-(N-Benzoylbenzamido)pyridine-3-yl benzoate”. English. In:

Journal of Chemical Crystallography 41.10 (Oct. 2011), 1520–1527 (Cited 0 time).

doi: 10.1007/s10870-011-0134-3.

[11]

2011

•

Nurten Akman, Murat Taş, Cem Özdoğan, and Ihsan Boustani. “Ionization energies,

Coulomb explosion, fragmentation, geometric, and electronic structures of multi-

charged boron clusters B-n (n=2-13)”. English. In: Physical Review B 84.7 (Aug.

2011), 075463 (Cited 28 times). doi: 10.1103/PhysRevB.84.075463.

[12]

2011

•

Ahmet Artu Yıldırım and Cem Özdoğan. “Parallel WaveCluster: A linear scaling

parallel clustering algorithm implementation with application to very large datasets”.

English. In: Journal of Parallel and Distributed Computing 71.7 (July 2011), 955–962

(Cited 6 times). doi: 10.1016/j.jpdc.2011.03.007.

[13]

2011

•

Jens Kunstmann, Cem Özdoğan, Alexander Quandt, and Holger Fehske. “Stability

of edge states and edge magnetism in graphene nanoribbons”. English. In: Physical

Review B 83.4 (Jan. 2011), 045414 (Cited 191 times). doi:

10.1103/PhysRevB.

83.045414.

[14]

2011

•

Ahmet Artu Yıldırım and Cem Özdoğan. “Parallel wavelet-based clustering algorithm

on GPUs using CUDA”. English. In: Procedia Computer Science 3 (2011). Ed. by A

Karahoca and S Kanbul. 1st World Conference on Information Technology (WCIT),

Bahcesehir Univ, Istanbul, Turkey, Oct 06-10, 2010, 396–400 (Cited 5 times). doi:

10.1016/j.procs.2010.12.066.

[15]

2010

•

Alexander Quandt and Cem Özdoğan. “Feynman, biominerals and graphene - Basic

aspects of nanoscience”. English. In: Communications in Nonlinear Science and

Numerical Simulation 15.6 (June 2010), 1575–1582 (Cited 4 times). doi:

10.1016/

j.cnsns.2009.06.009.

[16]

2010

•

Cem Özdoğan, Saikat Mukhopadhyay, W. Hayami, Ziya Burhanettin Güvenç, Ravin-

dra Pandey, and Ihsan Boustani. “The Unusually Stable B-100 Fullerene, Structural

Transitions in Boron Nanostructures, and a Comparative Study of alpha- and gamma-

Boron and Sheets”. English. In: Journal of Physical Chemistry C 114.10 (Mar. 2010),

4362–4375 (Cited 138 times). doi: 10.1021/jp911641u.

[17]

2009

•

Murat Atiş, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Density Functional Study

of Physical and Chemical Properties of Nano Size Boron Clusters: B-n (n=13-20)”.

English. In: Chinese Journal of Chemical Physics 22.4 (Aug. 2009), 380–388 (Cited

22 times). doi: 10.1088/1674-0068/22/04/380-388.

[18]

2008

•

Alexander Quandt, Cem Özdoğan, Jens Kunstmann, and Holger Fehske. “Boron

doped graphene nanostructures”. English. In: Physica Status Solidi B 245.10, SI

(Oct. 2008), 2077–2081 (Cited 17 times). doi: 10.1002/pssb.200879559.

[19]

2008

•

Alexander Quandt, Cem Özdoğan, Jens Kunstmann, and Holger Fehske. “Function-

alizing graphene by embedded boron clusters”. English. In: Nanotechnology 19.33

(Aug. 2008), 335707 (Cited 20 times). doi:

10.1088/0957-4484/19/33/335707

[20]

2008

•

Cem Özdoğan, Murat Atiş, and Ziya Burhanettin Güvenç. “Surface modiﬁcation by

1 keV ion impact: molecular dynamics study of an Ar+-Ni(100) collision system”.

English. In: Modelling and Simulation in Materials Science and Engineering 16.3

(Apr. 2008), 035003 (Cited 0 time). doi: 10.1088/0965-0393/16/3/035003.

[21]

2008

•

Mustafa Böyükata, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Eﬀects of hydro-

gen hosting on cage structures of boron clusters: density functional study of

(

= 5

−

10 and

n ≤ m

) complexes”. English. In: Physica Scripta 77.2 (Feb. 2008),

025602 (Cited 8 times). doi: 10.1088/0031-8949/77/02/025602.

[22]

2008

•

Mustafa Böyükata, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Hydrogen hosting

of nanoscale boron cluster”. English. In: Romanian Journal of Information Science

and Technology 11.1 (2008), 59–70 (Cited 3 times).

[23]

2007

•

Gülay Dereli, Banu Süngü, and Cem Özdoğan. “Thermal stability of metallic single-

walled carbon nanotubes: an O(N) tight-binding molecular dynamics simulation

study”. English. In: Nanotechnology 18.24 (June 2007), 245704 (Cited 8 times).

doi: 10.1088/0957-4484/18/24/245704.

[24]

2007

•

Mustafa Böyükata, Cem Özdoğan, and Ziya Burhanettin Güvenç. “An investigation

of hydrogen bonded neutral B4Hn (n=1-11) and anionic B4H11(-1) clusters: Density

functional study”. English. In: Journal of Molecular Structure-THEOCHEM 805.1-3

(Mar. 2007), 91–100 (Cited 23 times). doi:

10.1016/j.theochem.2006.10.015

[25]

2007

•

Murat Atiş, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Structure and energetic

of B-n (n=2-12) clusters: Electronic structure calculations”. English. In: International

Journal of Quantum Chemistry 107.3 (Mar. 2007), 729–744 (Cited 46 times). doi:

10.1002/qua.21171.

[26]

2005

•

Murat Atiş, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Parallelization of a

molecular dynamics simulation of an ion-surface collision”. English. In: International

Journal of Modern Physics C 16.6 (June 2005), 969–990 (Cited 3 times). doi:

10.1142/S0129183105007649.

[27]

2003

•

Gülay Dereli and Cem Özdoğan. “O(N) algorithms in tight-binding molecular-

dynamics simulations of the electronic structure of carbon nanotubes”. English. In:

Physical Review B 67.3 (Jan. 2003), 035415 (Cited 10 times). doi:

10.1103/

PhysRevB.67.035415.

[28]

2003

•

Gülay Dereli and Cem Özdoğan. “Structural stability and energetics of single-walled

carbon nanotubes under uniaxial strain”. English. In: Physical Review B 67.3 (Jan.

2003), 035416 (Cited 66 times). doi: 10.1103/PhysRevB.67.035416.

[29]

2002

•

Cem Özdoğan, Gülay Dereli, and Tahir Çağın. “O(N) parallel tight binding molecular

dynamics simulation of carbon nanotubes”. English. In: Computer Physics Com-

munications 148.2 (Oct. 2002), 188–205 (Cited 13 times). doi:

10.1016/S0010-

4655(02)00553-2.

[30]

1997

•

Cem Özdoğan and Şakir Erkoç. “Molecular-dynamics simulation of the structural

stability, energetics, and melting of Cu-n(n=13-135) clusters”. English. In: Zeitschrift

fur Physik D-Atoms Molecules and Clusters 41.3 (Aug. 1997), 205–209 (Cited 14

times).

{ Web of Science Categories

Conference Publications

[31]

2018

•

Cem Özdoğan and Nurten Akman. “Properties of Graphene In-Plane Hybrid Embrac-

ing Hexagonal Shaped Hexagonal-Boron Nitride (h-BN) Islands and Vacancy Induced

Magnetism”. In: 3nd International Conference on Material Science and Technology

(IMSTEC’18), September 17-19, 2018. Nevşehir, Türkiye, 2018, pp. 323–329.

[32]

2014

•

Hani A. Alariﬁ, Murat Atiş, Cem Özdoğan, Amming Hu, Mustafa Yavuz, and Y.

Zhou. “Stability and Melting of FCC Truncated Octahedral Ag Nanoparticles by

Molecular Dynamics Simulation”. In: International Conference on Nanojoining and

Microjoining, December 7-10, 2014. Emmetten, Switzerland, 2014, R27.

[33]

2012

•

Hani A. Alariﬁ, Murat Atiş, Cem Özdoğan, Amming Hu, Mustafa Yavuz, and Y.

Zhou. “Ag Nanoparticles and their Application in Low-Temperature Bonding of Cu”.

In: International Conference on Nanojoining and Microjoining, December 2-5, 2012.

Tsinghua University , Beijing, China, 2012, pp. 83–84.

[34]

2010

•

Nurten Akman, Murat Taş, Cem Özdoğan, Ihsan Boustani, and Ziya Burhanettin

Güvenç. “A DFT Study on the Minimum Energy Conﬁgurations and Stabilities of

Cationic Boron Clusters

(n=2-13)”. In: New Trends in Nanotechnology and

Nonlinear Dynamical Systems, July 25 - 27, 2010. Çankaya Üniversitesi, Ankara,

Türkiye, 2010, pp. 1–5.

[35]

2010

•

Ahmet Artu Yıldırım and Cem Özdoğan. “Geniş Veri Kümeleri Üzerinde Paralel

Öbekleme Uygulaması: Paralel Wavecluster (Parallel Clustering Application on Large

Datasets: Parallel Wavecluster)”. In: BASARIM’10 II. Ulusal Yuksek Basarimli

ve Grid Hesaplama Konferansi (National High Performance and Grid Computing

Conference), July 10-13, 2010. ITU SDKM, Istanbul, Türkiye, 2010, pp. 51–59.

[36]

2010

•

Ahmet Artu Yıldırım, Efe Çiftçi, and Cem Özdoğan. “Geniş Veri Kümeleri Üzerinde

Paralel Veri Madenciliği (Parallel Data Mining on Large Datasets)”. In: 3. Mühendislik

ve Teknoloji Sempozyumu (Engineering and Technology Symposium), April 29-30,

2010. Çankaya Üniversitesi, Ankara, Türkiye, 2010, pp. 29–33.

[37]

2010

•

Ahmet Türk, Cem Özdoğan, and Yahya Kemal Baykal. “Elektromanyetik alanların

insan kafası üzerinde olusturdugu ısı etkisi (Thermal eﬀects of electromagnetic ﬁelds

on the human head)”. In: 3. Mühendislik ve Teknoloji Sempozyumu (Engineering and

Technology Symposium), April 29-30, 2010. Çankaya Üniversitesi, Ankara, Türkiye,

2010, pp. 326–332.

[38]

2008

•

Alexander Quandt, Cem Özdoğan, Maurizio Ferrari, and Giorgio Speranza. “About

Nanometer Sized Analogues of Basic Electronic and Optical Components”. English.

In: 2008 2nd ICTON Mediterranean Winter (ICTON-MW). ICTON Mediterranean

Winter Conference. 2008 2nd ICTON Mediterranean Winter Conference, Marrakech,

Morocco, Dec 11-13, 2008. IEEE. 2008, 195–198 (Cited 0 time).

[39]

2008

•

Ahmet Özgür Erdursun and Cem Özdoğan. “Nanoteknolojik Ürunler Elde Edilmesinde

Kullanılan Benzetim ve Analiz Yazılımları ve Süreçleri (Simulation and Analysis

Software Products and Processes used to obtain nanotechnology products)”. In: 1.

Mühendislik ve Teknoloji Sempozyumu (Engineering and Technology Symposium),

April 24-25, 2008. Çankaya Üniversitesi, Ankara, Türkiye, 2008, pp. 94–99.

[40]

2007

•

Mustafa Böyükata, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Electronic Struc-

ture Analysis of Hydrogenated Nano Scale Boron Clusters: DFT Study of Anionic and

Cationic Complexes of

(

= 5

−

10 and

n ≤ m

)”. In: Second International

Hydrogen Energy Congress, July 13-15, 2007. Istanbul, Türkiye, 2007, pp. 1–12.

[41]

2006

•

Murat Atiş, Mustafa Böyükata, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Bor

mikro-topakları ve hidrojen depolamasındaki becerilerinin incelenmesi (Investigation

of the ability of boron microclusters on hydrogen storage)”. In: III. Ulusal Hidrojen

Enerjisi Kongresi (National Hydrogen Energy Congress), July 17, 2006. Istanbul,

Türkiye, 2006, pp. 1–6.

[42]

2006

•

Ziya Burhanettin Güvenç, Murat Atiş, and Cem Özdoğan. “Surface Modiﬁcation by

1 keV Ar Ion: Molecular Dynamics Study of Ar+Ni(100) Collision System”. In: 2nd

International Congress on Radiation Physics and Chemistry of Inorganic Materials -

Modiﬁcation of material properties, September 10-15, 2006. Tomsk, Russia, 2006,

pp. 284–287.

[43]

2002

•

Murat Atiş, Cem Özdoğan, and Ziya Burhanettin Güvenç. “Yüksek Ölçekli Parallel

Atomistik Bilgisayar Simulasyonu: Yuzey-ion Carpisması (Large Scale Parallel Atom-

istic Computer Simulation: Surface-ion collision)”. In: Yüksek Performanslı Bilişim

Sempozyumu (High Performance Computing Symposium), October 24, 2002. Gebze

Yüksek Teknoloji Enstitüsü, Gebze, Türkiye, 2002, pp. 1–6.

Book Sections

[44]

2014

•

Ahmet Artu Yıldırım, Cem Özdoğan, and Dan Watson. “Parallel Data Reduction

Techniques for Big Datasets”. In: Big Data Management, Technologies, and Appli-

cations. Ed. by Wen-Chen Hu and Naima Kaabouch. Hershey, PA, USA: IGI Global,

2014, pp. 72–93. doi: 10.4018/978-1-4666-4699-5.ch004.

[45]

2007

•

Cem Özdoğan. “Scaling Behavior of the Tight Binding Molecular Dynamics Code with

Parallel Matrix Diagonalization (ScaLAPACK): Application to Carbon Nanotube”.

In: HPC-Europe, Science and Supercomputing in Europe Report 2007. Stuttgart,

Germany, 2007, pp. 1040–1043.

Thesis

[46]

2002

•

Cem Özdoğan. “Order(N) Parallel Tight Binding Molecular Dynamics Computer

Simulation: Application to Carbon Nanotubes”. PhD. Ankara, Turkey: Middle East

Technical University, June 2002.

[47]

1996

•

Cem Özdoğan. “Molecular Dynamics Computer Simulation of Copper Clusters:

Structural Stability, Energetics and Melting”. MSc. Ankara, Turkey: Middle East

Technical University, June 1996.

{

For 34 "abstracts" (Short/Long Abstracts (25), Invited Talks (7), Posters (2) ),

please see the link

http://cemozdogan.net/work.html#Proceedings%20&%20Abstracts%20|outline